master
Installation
Getting Started
Operating systems
MacOS
Windows
Linux
Input files
Whole Slide Image files
Supported Formats
Tissue array map file
File locations
User interface
Whole Slide Image export
Tissue export window
Example tissue array export workflow 1 - Auto threshold
Example tissue array export workflow 2 - Manual selection
DAB stain analysis
Input
Selecting a threshold window
Running the analysis
Output from QuArray
Tissue core threshold output
1. Whole core images - indexed with coordinates in the file name
Image of the selection panel
2. Figure containing images of all tissue cores in an array
3. Image metadata in JSON format
Chromogen measurement output
Output file structure
Measurements as performed in python
Amount of Tissue
Amount of Signal
Acknowledgements
QuArray
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