Logo
stable
  • Installation
    • Getting Started
    • Operating systems
      • MacOS
      • Windows
      • Linux
  • Input files
    • Whole Slide Image files
      • Supported Formats
    • Tissue array map file
    • File locations
    • User interface
  • Whole Slide Image export
    • Tissue export window
      • Example tissue array export workflow 1 - Auto threshold
      • Example tissue array export workflow 2 - Manual selection
  • DAB stain analysis
    • Input
    • Selecting a threshold window
    • Running the analysis
  • Output from QuArray
    • Tissue core threshold output
      • 1. Whole core images - indexed with coordinates in the file name
      • Image of the selection panel
      • 2. Figure containing images of all tissue cores in an array
      • 3. Image metadata in JSON format
    • Chromogen measurement output
    • Output file structure
  • Measurements as performed in python
    • Amount of Tissue
    • Amount of Signal
  • Acknowledgements
QuArray
  • Docs »
  • Search
  • Edit on GitHub

© Copyright 2020, Callum Arthurs Revision 82d8514b.

Built with Sphinx using a theme provided by Read the Docs.